fix: replace print() with logging across harness package (#1282)

Replace all bare print() calls with proper logging using Python's
standard logging module across the deerflow harness package.

Changes across 8 files (16 print statements replaced):

- agents/middlewares/clarification_middleware.py: use logger.info/debug
- agents/middlewares/memory_middleware.py: use logger.debug
- agents/middlewares/thread_data_middleware.py: use logger.debug
- agents/middlewares/view_image_middleware.py: use logger.debug
- agents/memory/queue.py: use logger.info/debug/warning/error
- agents/lead_agent/prompt.py: use logger.error
- skills/loader.py: use logger.warning
- skills/parser.py: use logger.error

Each file follows the established codebase convention:
  import logging
  logger = logging.getLogger(__name__)

Log levels chosen based on message semantics:
- debug: routine operational details (directory creation, timer resets)
- info: significant state changes (memory queued, updates processed)
- warning: recoverable issues (config load failures, skipped updates)
- error: unexpected failures (parsing errors, memory update errors)

Note: client.py is intentionally excluded as it uses print() for
CLI output, which is the correct behavior for a command-line client.

Co-authored-by: moose-lab <moose-lab@users.noreply.github.com>

backend/packages/harness/deerflow/agents/middlewares/thread_data_middleware.py

@@ -1,3 +1,4 @@
+import logging
 from typing import NotRequired, override
 
 from langchain.agents import AgentState
@@ -8,6 +9,8 @@ from langgraph.runtime import Runtime
 from deerflow.agents.thread_state import ThreadDataState
 from deerflow.config.paths import Paths, get_paths
 
+logger = logging.getLogger(__name__)
+
 
 class ThreadDataMiddlewareState(AgentState):
     """Compatible with the `ThreadState` schema."""
@@ -87,7 +90,7 @@ class ThreadDataMiddleware(AgentMiddleware[ThreadDataMiddlewareState]):
         else:
             # Eager initialization: create directories immediately
             paths = self._create_thread_directories(thread_id)
-            print(f"Created thread data directories for thread {thread_id}")
+            logger.debug("Created thread data directories for thread %s", thread_id)
 
         return {
             "thread_data": {