refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)

* refactor: extract shared utils to break harness→app cross-layer imports

Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: split backend/src into harness (deerflow.*) and app (app.*)

Physically split the monolithic backend/src/ package into two layers:

- **Harness** (`packages/harness/deerflow/`): publishable agent framework
  package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
  models, MCP, skills, config, and all core infrastructure.

- **App** (`app/`): unpublished application code with import prefix `app.*`.
  Contains gateway (FastAPI REST API) and channels (IM integrations).

Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure

Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* chore: add harness→app boundary check test and update docs

Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.

Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: add config versioning with auto-upgrade on startup

When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.

- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix comments

* fix: update src.* import in test_sandbox_tools_security to deerflow.*

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: handle empty config and search parent dirs for config.example.yaml

Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
  looking next to config.yaml, fixing detection in common setups

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: correct skills root path depth and config_version type coercion

- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
  after harness split, file lives at packages/harness/deerflow/skills/
  so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
  _check_config_version() to prevent TypeError when YAML stores value
  as string (e.g. config_version: "1")
- tests: add regression tests for both fixes

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: update test imports from src.* to deerflow.*/app.* after harness refactor

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
DanielWalnut
2026-03-14 22:55:52 +08:00
committed by GitHub
parent 9b49a80dda
commit 76803b826f
198 changed files with 1786 additions and 941 deletions

View File

@@ -55,7 +55,7 @@ This document provides a comprehensive overview of the DeerFlow backend architec
The LangGraph server is the core agent runtime, built on LangGraph for robust multi-agent workflow orchestration.
**Entry Point**: `src/agents/lead_agent/agent.py:make_lead_agent`
**Entry Point**: `packages/harness/deerflow/agents/lead_agent/agent.py:make_lead_agent`
**Key Responsibilities**:
- Agent creation and configuration
@@ -70,7 +70,7 @@ The LangGraph server is the core agent runtime, built on LangGraph for robust mu
{
"agent": {
"type": "agent",
"path": "src.agents:make_lead_agent"
"path": "deerflow.agents:make_lead_agent"
}
}
```
@@ -79,7 +79,7 @@ The LangGraph server is the core agent runtime, built on LangGraph for robust mu
FastAPI application providing REST endpoints for non-agent operations.
**Entry Point**: `src/gateway/app.py`
**Entry Point**: `app/gateway/app.py`
**Routers**:
- `models.py` - `/api/models` - Model listing and details
@@ -158,7 +158,7 @@ class ThreadState(AgentState):
▼ ▼
┌─────────────────────────┐ ┌─────────────────────────┐
│ LocalSandboxProvider │ │ AioSandboxProvider │
│ (src/sandbox/local.py) │ │ (src/community/) │
│ (packages/harness/deerflow/sandbox/local.py) │ │ (packages/harness/deerflow/community/) │
│ │ │ │
│ - Singleton instance │ │ - Docker-based │
│ - Direct execution │ │ - Isolated containers │
@@ -192,7 +192,7 @@ class ThreadState(AgentState):
┌─────────────────────┐ ┌─────────────────────┐ ┌─────────────────────┐
│ Built-in Tools │ │ Configured Tools │ │ MCP Tools │
│ (src/tools/) │ │ (config.yaml) │ │ (extensions.json) │
│ (packages/harness/deerflow/tools/) │ │ (config.yaml) │ │ (extensions.json) │
├─────────────────────┤ ├─────────────────────┤ ├─────────────────────┤
│ - present_file │ │ - web_search │ │ - github │
│ - ask_clarification │ │ - web_fetch │ │ - filesystem │
@@ -208,7 +208,7 @@ class ThreadState(AgentState):
┌─────────────────────────┐
│ get_available_tools() │
│ (src/tools/__init__) │
│ (packages/harness/deerflow/tools/__init__) │
└─────────────────────────┘
```
@@ -217,7 +217,7 @@ class ThreadState(AgentState):
```
┌─────────────────────────────────────────────────────────────────────────┐
│ Model Factory │
│ (src/models/factory.py) │
│ (packages/harness/deerflow/models/factory.py) │
└─────────────────────────────────────────────────────────────────────────┘
config.yaml:
@@ -264,7 +264,7 @@ config.yaml:
```
┌─────────────────────────────────────────────────────────────────────────┐
│ MCP Integration │
│ (src/mcp/manager.py) │
│ (packages/harness/deerflow/mcp/manager.py) │
└─────────────────────────────────────────────────────────────────────────┘
extensions_config.json:
@@ -302,7 +302,7 @@ extensions_config.json:
```
┌─────────────────────────────────────────────────────────────────────────┐
│ Skills System │
│ (src/skills/loader.py) │
│ (packages/harness/deerflow/skills/loader.py) │
└─────────────────────────────────────────────────────────────────────────┘
Directory Structure: