refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)

* refactor: extract shared utils to break harness→app cross-layer imports

Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: split backend/src into harness (deerflow.*) and app (app.*)

Physically split the monolithic backend/src/ package into two layers:

- **Harness** (`packages/harness/deerflow/`): publishable agent framework
  package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
  models, MCP, skills, config, and all core infrastructure.

- **App** (`app/`): unpublished application code with import prefix `app.*`.
  Contains gateway (FastAPI REST API) and channels (IM integrations).

Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure

Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* chore: add harness→app boundary check test and update docs

Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.

Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: add config versioning with auto-upgrade on startup

When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.

- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix comments

* fix: update src.* import in test_sandbox_tools_security to deerflow.*

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: handle empty config and search parent dirs for config.example.yaml

Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
  looking next to config.yaml, fixing detection in common setups

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: correct skills root path depth and config_version type coercion

- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
  after harness split, file lives at packages/harness/deerflow/skills/
  so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
  _check_config_version() to prevent TypeError when YAML stores value
  as string (e.g. config_version: "1")
- tests: add regression tests for both fixes

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: update test imports from src.* to deerflow.*/app.* after harness refactor

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
DanielWalnut
2026-03-14 22:55:52 +08:00
committed by GitHub
parent 9b49a80dda
commit 76803b826f
198 changed files with 1786 additions and 941 deletions

View File

@@ -6,8 +6,8 @@ import asyncio
from pathlib import Path
from unittest.mock import MagicMock, patch
from src.channels.base import Channel
from src.channels.message_bus import MessageBus, OutboundMessage, ResolvedAttachment
from app.channels.base import Channel
from app.channels.message_bus import MessageBus, OutboundMessage, ResolvedAttachment
def _run(coro):
@@ -102,7 +102,7 @@ class TestOutboundMessageAttachments:
class TestResolveAttachments:
def test_resolves_existing_file(self, tmp_path):
"""Successfully resolves a virtual path to an existing file."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
# Create the directory structure: threads/{thread_id}/user-data/outputs/
thread_id = "test-thread-123"
@@ -115,7 +115,7 @@ class TestResolveAttachments:
mock_paths.resolve_virtual_path.return_value = test_file
mock_paths.sandbox_outputs_dir.return_value = outputs_dir
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments(thread_id, ["/mnt/user-data/outputs/report.pdf"])
assert len(result) == 1
@@ -126,7 +126,7 @@ class TestResolveAttachments:
def test_resolves_image_file(self, tmp_path):
"""Images are detected by MIME type."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
thread_id = "test-thread"
outputs_dir = tmp_path / "threads" / thread_id / "user-data" / "outputs"
@@ -138,7 +138,7 @@ class TestResolveAttachments:
mock_paths.resolve_virtual_path.return_value = img
mock_paths.sandbox_outputs_dir.return_value = outputs_dir
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments(thread_id, ["/mnt/user-data/outputs/chart.png"])
assert len(result) == 1
@@ -147,7 +147,7 @@ class TestResolveAttachments:
def test_skips_missing_file(self, tmp_path):
"""Missing files are skipped with a warning."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
outputs_dir = tmp_path / "outputs"
outputs_dir.mkdir()
@@ -156,30 +156,30 @@ class TestResolveAttachments:
mock_paths.resolve_virtual_path.return_value = outputs_dir / "nonexistent.txt"
mock_paths.sandbox_outputs_dir.return_value = outputs_dir
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments("t1", ["/mnt/user-data/outputs/nonexistent.txt"])
assert result == []
def test_skips_invalid_path(self):
"""Invalid paths (ValueError from resolve) are skipped."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
mock_paths = MagicMock()
mock_paths.resolve_virtual_path.side_effect = ValueError("bad path")
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments("t1", ["/invalid/path"])
assert result == []
def test_rejects_uploads_path(self):
"""Paths under /mnt/user-data/uploads/ are rejected (security)."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
mock_paths = MagicMock()
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments("t1", ["/mnt/user-data/uploads/secret.pdf"])
assert result == []
@@ -187,11 +187,11 @@ class TestResolveAttachments:
def test_rejects_workspace_path(self):
"""Paths under /mnt/user-data/workspace/ are rejected (security)."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
mock_paths = MagicMock()
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments("t1", ["/mnt/user-data/workspace/config.py"])
assert result == []
@@ -199,7 +199,7 @@ class TestResolveAttachments:
def test_rejects_path_traversal_escape(self, tmp_path):
"""Paths that escape the outputs directory after resolution are rejected."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
thread_id = "t1"
outputs_dir = tmp_path / "threads" / thread_id / "user-data" / "outputs"
@@ -213,14 +213,14 @@ class TestResolveAttachments:
mock_paths.resolve_virtual_path.return_value = escaped_file
mock_paths.sandbox_outputs_dir.return_value = outputs_dir
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments(thread_id, ["/mnt/user-data/outputs/../uploads/stolen.txt"])
assert result == []
def test_multiple_artifacts_partial_resolution(self, tmp_path):
"""Mixed valid/invalid artifacts: only valid ones are returned."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
thread_id = "t1"
outputs_dir = tmp_path / "outputs"
@@ -238,7 +238,7 @@ class TestResolveAttachments:
mock_paths.resolve_virtual_path.side_effect = resolve_side_effect
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments(
thread_id,
["/mnt/user-data/outputs/data.csv", "/mnt/user-data/outputs/missing.txt"],
@@ -417,17 +417,17 @@ class TestBaseChannelOnOutbound:
class TestManagerArtifactResolution:
def test_handle_chat_populates_attachments(self):
"""Verify _resolve_attachments is importable and works with the manager module."""
from src.channels.manager import _resolve_attachments
from app.channels.manager import _resolve_attachments
# Basic smoke test: empty artifacts returns empty list
mock_paths = MagicMock()
with patch("src.config.paths.get_paths", return_value=mock_paths):
with patch("deerflow.config.paths.get_paths", return_value=mock_paths):
result = _resolve_attachments("t1", [])
assert result == []
def test_format_artifact_text_for_unresolved(self):
"""_format_artifact_text produces expected output."""
from src.channels.manager import _format_artifact_text
from app.channels.manager import _format_artifact_text
assert "report.pdf" in _format_artifact_text(["/mnt/user-data/outputs/report.pdf"])
result = _format_artifact_text(["/mnt/user-data/outputs/a.txt", "/mnt/user-data/outputs/b.txt"])