refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)

* refactor: extract shared utils to break harness→app cross-layer imports

Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: split backend/src into harness (deerflow.*) and app (app.*)

Physically split the monolithic backend/src/ package into two layers:

- **Harness** (`packages/harness/deerflow/`): publishable agent framework
  package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
  models, MCP, skills, config, and all core infrastructure.

- **App** (`app/`): unpublished application code with import prefix `app.*`.
  Contains gateway (FastAPI REST API) and channels (IM integrations).

Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure

Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* chore: add harness→app boundary check test and update docs

Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.

Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: add config versioning with auto-upgrade on startup

When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.

- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix comments

* fix: update src.* import in test_sandbox_tools_security to deerflow.*

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: handle empty config and search parent dirs for config.example.yaml

Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
  looking next to config.yaml, fixing detection in common setups

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: correct skills root path depth and config_version type coercion

- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
  after harness split, file lives at packages/harness/deerflow/skills/
  so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
  _check_config_version() to prevent TypeError when YAML stores value
  as string (e.g. config_version: "1")
- tests: add regression tests for both fixes

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: update test imports from src.* to deerflow.*/app.* after harness refactor

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
DanielWalnut
2026-03-14 22:55:52 +08:00
committed by GitHub
parent 9b49a80dda
commit 76803b826f
198 changed files with 1786 additions and 941 deletions

View File

@@ -11,13 +11,13 @@ Covers:
import pytest
from src.config.subagents_config import (
from deerflow.config.subagents_config import (
SubagentOverrideConfig,
SubagentsAppConfig,
get_subagents_app_config,
load_subagents_config_from_dict,
)
from src.subagents.config import SubagentConfig
from deerflow.subagents.config import SubagentConfig
# ---------------------------------------------------------------------------
# Helpers
@@ -195,32 +195,32 @@ class TestRegistryGetSubagentConfig:
_reset_subagents_config()
def test_returns_none_for_unknown_agent(self):
from src.subagents.registry import get_subagent_config
from deerflow.subagents.registry import get_subagent_config
assert get_subagent_config("nonexistent") is None
def test_returns_config_for_builtin_agents(self):
from src.subagents.registry import get_subagent_config
from deerflow.subagents.registry import get_subagent_config
assert get_subagent_config("general-purpose") is not None
assert get_subagent_config("bash") is not None
def test_default_timeout_preserved_when_no_config(self):
from src.subagents.registry import get_subagent_config
from deerflow.subagents.registry import get_subagent_config
_reset_subagents_config(timeout_seconds=900)
config = get_subagent_config("general-purpose")
assert config.timeout_seconds == 900
def test_global_timeout_override_applied(self):
from src.subagents.registry import get_subagent_config
from deerflow.subagents.registry import get_subagent_config
_reset_subagents_config(timeout_seconds=1800)
config = get_subagent_config("general-purpose")
assert config.timeout_seconds == 1800
def test_per_agent_timeout_override_applied(self):
from src.subagents.registry import get_subagent_config
from deerflow.subagents.registry import get_subagent_config
load_subagents_config_from_dict(
{
@@ -232,7 +232,7 @@ class TestRegistryGetSubagentConfig:
assert bash_config.timeout_seconds == 120
def test_per_agent_override_does_not_affect_other_agents(self):
from src.subagents.registry import get_subagent_config
from deerflow.subagents.registry import get_subagent_config
load_subagents_config_from_dict(
{
@@ -245,8 +245,8 @@ class TestRegistryGetSubagentConfig:
def test_builtin_config_object_is_not_mutated(self):
"""Registry must return a new object, leaving the builtin default intact."""
from src.subagents.builtins import BUILTIN_SUBAGENTS
from src.subagents.registry import get_subagent_config
from deerflow.subagents.builtins import BUILTIN_SUBAGENTS
from deerflow.subagents.registry import get_subagent_config
original_timeout = BUILTIN_SUBAGENTS["bash"].timeout_seconds
load_subagents_config_from_dict({"timeout_seconds": 42})
@@ -257,8 +257,8 @@ class TestRegistryGetSubagentConfig:
def test_config_preserves_other_fields(self):
"""Applying timeout override must not change other SubagentConfig fields."""
from src.subagents.builtins import BUILTIN_SUBAGENTS
from src.subagents.registry import get_subagent_config
from deerflow.subagents.builtins import BUILTIN_SUBAGENTS
from deerflow.subagents.registry import get_subagent_config
_reset_subagents_config(timeout_seconds=300)
original = BUILTIN_SUBAGENTS["general-purpose"]
@@ -282,21 +282,21 @@ class TestRegistryListSubagents:
_reset_subagents_config()
def test_lists_both_builtin_agents(self):
from src.subagents.registry import list_subagents
from deerflow.subagents.registry import list_subagents
names = {cfg.name for cfg in list_subagents()}
assert "general-purpose" in names
assert "bash" in names
def test_all_returned_configs_get_global_override(self):
from src.subagents.registry import list_subagents
from deerflow.subagents.registry import list_subagents
_reset_subagents_config(timeout_seconds=123)
for cfg in list_subagents():
assert cfg.timeout_seconds == 123, f"{cfg.name} has wrong timeout"
def test_per_agent_overrides_reflected_in_list(self):
from src.subagents.registry import list_subagents
from deerflow.subagents.registry import list_subagents
load_subagents_config_from_dict(
{