refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)

* refactor: extract shared utils to break harness→app cross-layer imports

Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: split backend/src into harness (deerflow.*) and app (app.*)

Physically split the monolithic backend/src/ package into two layers:

- **Harness** (`packages/harness/deerflow/`): publishable agent framework
  package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
  models, MCP, skills, config, and all core infrastructure.

- **App** (`app/`): unpublished application code with import prefix `app.*`.
  Contains gateway (FastAPI REST API) and channels (IM integrations).

Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure

Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* chore: add harness→app boundary check test and update docs

Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.

Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: add config versioning with auto-upgrade on startup

When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.

- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix comments

* fix: update src.* import in test_sandbox_tools_security to deerflow.*

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: handle empty config and search parent dirs for config.example.yaml

Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
  looking next to config.yaml, fixing detection in common setups

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: correct skills root path depth and config_version type coercion

- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
  after harness split, file lives at packages/harness/deerflow/skills/
  so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
  _check_config_version() to prevent TypeError when YAML stores value
  as string (e.g. config_version: "1")
- tests: add regression tests for both fixes

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: update test imports from src.* to deerflow.*/app.* after harness refactor

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
DanielWalnut
2026-03-14 22:55:52 +08:00
committed by GitHub
parent 9b49a80dda
commit 76803b826f
198 changed files with 1786 additions and 941 deletions

81
backend/uv.lock generated
View File

@@ -1,5 +1,5 @@
version = 1
revision = 3
revision = 2
requires-python = ">=3.12"
resolution-markers = [
"python_full_version >= '3.14' and sys_platform == 'win32'",
@@ -10,6 +10,12 @@ resolution-markers = [
"python_full_version < '3.13' and sys_platform != 'win32'",
]
[manifest]
members = [
"deer-flow",
"deerflow-harness",
]
[[package]]
name = "agent-sandbox"
version = "0.0.19"
@@ -642,12 +648,56 @@ wheels = [
name = "deer-flow"
version = "0.1.0"
source = { virtual = "." }
dependencies = [
{ name = "deerflow-harness" },
{ name = "fastapi" },
{ name = "httpx" },
{ name = "langgraph-sdk" },
{ name = "lark-oapi" },
{ name = "markdown-to-mrkdwn" },
{ name = "python-multipart" },
{ name = "python-telegram-bot" },
{ name = "slack-sdk" },
{ name = "sse-starlette" },
{ name = "uvicorn", extra = ["standard"] },
]
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "ruff" },
]
[package.metadata]
requires-dist = [
{ name = "deerflow-harness", editable = "packages/harness" },
{ name = "fastapi", specifier = ">=0.115.0" },
{ name = "httpx", specifier = ">=0.28.0" },
{ name = "langgraph-sdk", specifier = ">=0.1.51" },
{ name = "lark-oapi", specifier = ">=1.4.0" },
{ name = "markdown-to-mrkdwn", specifier = ">=0.3.1" },
{ name = "python-multipart", specifier = ">=0.0.20" },
{ name = "python-telegram-bot", specifier = ">=21.0" },
{ name = "slack-sdk", specifier = ">=3.33.0" },
{ name = "sse-starlette", specifier = ">=2.1.0" },
{ name = "uvicorn", extras = ["standard"], specifier = ">=0.34.0" },
]
[package.metadata.requires-dev]
dev = [
{ name = "pytest", specifier = ">=8.0.0" },
{ name = "ruff", specifier = ">=0.14.11" },
]
[[package]]
name = "deerflow-harness"
version = "0.1.0"
source = { editable = "packages/harness" }
dependencies = [
{ name = "agent-sandbox" },
{ name = "ddgs" },
{ name = "dotenv" },
{ name = "duckdb" },
{ name = "fastapi" },
{ name = "firecrawl-py" },
{ name = "httpx" },
{ name = "kubernetes" },
@@ -663,26 +713,13 @@ dependencies = [
{ name = "langgraph-cli" },
{ name = "langgraph-runtime-inmem" },
{ name = "langgraph-sdk" },
{ name = "lark-oapi" },
{ name = "markdown-to-mrkdwn" },
{ name = "markdownify" },
{ name = "markitdown", extra = ["all", "xlsx"] },
{ name = "pydantic" },
{ name = "python-multipart" },
{ name = "python-telegram-bot" },
{ name = "pyyaml" },
{ name = "readabilipy" },
{ name = "slack-sdk" },
{ name = "sse-starlette" },
{ name = "tavily-python" },
{ name = "tiktoken" },
{ name = "uvicorn", extra = ["standard"] },
]
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "ruff" },
]
[package.metadata]
@@ -691,7 +728,6 @@ requires-dist = [
{ name = "ddgs", specifier = ">=9.10.0" },
{ name = "dotenv", specifier = ">=0.9.9" },
{ name = "duckdb", specifier = ">=1.4.4" },
{ name = "fastapi", specifier = ">=0.115.0" },
{ name = "firecrawl-py", specifier = ">=1.15.0" },
{ name = "httpx", specifier = ">=0.28.0" },
{ name = "kubernetes", specifier = ">=30.0.0" },
@@ -707,26 +743,13 @@ requires-dist = [
{ name = "langgraph-cli", specifier = ">=0.4.14" },
{ name = "langgraph-runtime-inmem", specifier = ">=0.22.1" },
{ name = "langgraph-sdk", specifier = ">=0.1.51" },
{ name = "lark-oapi", specifier = ">=1.4.0" },
{ name = "markdown-to-mrkdwn", specifier = ">=0.3.1" },
{ name = "markdownify", specifier = ">=1.2.2" },
{ name = "markitdown", extras = ["all", "xlsx"], specifier = ">=0.0.1a2" },
{ name = "pydantic", specifier = ">=2.12.5" },
{ name = "python-multipart", specifier = ">=0.0.20" },
{ name = "python-telegram-bot", specifier = ">=21.0" },
{ name = "pyyaml", specifier = ">=6.0.3" },
{ name = "readabilipy", specifier = ">=0.3.0" },
{ name = "slack-sdk", specifier = ">=3.33.0" },
{ name = "sse-starlette", specifier = ">=2.1.0" },
{ name = "tavily-python", specifier = ">=0.7.17" },
{ name = "tiktoken", specifier = ">=0.8.0" },
{ name = "uvicorn", extras = ["standard"], specifier = ">=0.34.0" },
]
[package.metadata.requires-dev]
dev = [
{ name = "pytest", specifier = ">=8.0.0" },
{ name = "ruff", specifier = ">=0.14.11" },
]
[[package]]