* feat: Add github PAT configs, allowing larger github API rates.
* Update comment to English for better clarity
* fix: Remove unused config lines in config.example.yaml and unreferenced declarations in app_config. Fix lint issues and update documentation.
* fix: Remove unused imports, and passed the ruff check.
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
* fix(LLM): fixing Gemini thinking + tool calls via OpenAI gateway (#1180)
When using Gemini with thinking enabled through an OpenAI-compatible gateway,
the API requires that fields on thinking content blocks are
preserved and echoed back verbatim in subsequent requests. Standard
silently drops these signatures when serializing
messages, causing HTTP 400 errors:
Changes:
- Add PatchedChatOpenAI adapter that re-injects signed thinking blocks into
request payloads, preserving the signature chain across multi-turn
conversations with tool calls.
- Support two LangChain storage patterns: additional_kwargs.thinking_blocks
and content list.
- Add 11 unit tests covering signed/unsigned blocks, storage patterns, edge
cases, and precedence rules.
- Update config.example.yaml with Gemini + thinking gateway example.
- Update CONFIGURATION.md with detailed guidance and error explanation.
Fixes: #1180
* Updated the patched_openai.py with thought_signature of function call
* Apply suggestions from code review
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
* docs: fix inaccurate thought_signature description in CONFIGURATION.md (#1220)
* Initial plan
* docs: fix CONFIGURATION.md wording for thought_signature - tool-call objects, not thinking blocks
Co-authored-by: WillemJiang <219644+WillemJiang@users.noreply.github.com>
Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/360f5226-4631-48a7-a050-189094af8ffe
---------
Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: WillemJiang <219644+WillemJiang@users.noreply.github.com>
---------
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <198982749+Copilot@users.noreply.github.com>
* refactor: extract shared skill installer and upload manager to harness
Move duplicated business logic from Gateway routers and Client into
shared harness modules, eliminating code duplication.
New shared modules:
- deerflow.skills.installer: 6 functions (zip security, extraction, install)
- deerflow.uploads.manager: 7 functions (normalize, deduplicate, validate,
list, delete, get_uploads_dir, ensure_uploads_dir)
Key improvements:
- SkillAlreadyExistsError replaces stringly-typed 409 status routing
- normalize_filename rejects backslash-containing filenames
- Read paths (list/delete) no longer mkdir via get_uploads_dir
- Write paths use ensure_uploads_dir for explicit directory creation
- list_files_in_dir does stat inside scandir context (no re-stat)
- install_skill_from_archive uses single is_file() check (one syscall)
- Fix agent config key not reset on update_mcp_config/update_skill
Tests: 42 new (22 installer + 20 upload manager) + client hardening
* refactor: centralize upload URL construction and clean up installer
- Extract upload_virtual_path(), upload_artifact_url(), enrich_file_listing()
into shared manager.py, eliminating 6 duplicated URL constructions across
Gateway router and Client
- Derive all upload URLs from VIRTUAL_PATH_PREFIX constant instead of
hardcoded "mnt/user-data/uploads" strings
- Eliminate TOCTOU pre-checks and double file read in installer — single
ZipFile() open with exception handling replaces is_file() + is_zipfile()
+ ZipFile() sequence
- Add missing re-exports: ensure_uploads_dir in uploads/__init__.py,
SkillAlreadyExistsError in skills/__init__.py
- Remove redundant .lower() on already-lowercase CONVERTIBLE_EXTENSIONS
- Hoist sandbox_uploads_dir(thread_id) before loop in uploads router
* fix: add input validation for thread_id and filename length
- Reject thread_id containing unsafe filesystem characters (only allow
alphanumeric, hyphens, underscores, dots) — prevents 500 on inputs
like <script> or shell metacharacters
- Reject filenames longer than 255 bytes (OS limit) in normalize_filename
- Gateway upload router maps ValueError to 400 for invalid thread_id
* fix: address PR review — symlink safety, input validation coverage, error ordering
- list_files_in_dir: use follow_symlinks=False to prevent symlink metadata
leakage; check is_dir() instead of exists() for non-directory paths
- install_skill_from_archive: restore is_file() pre-check before extension
validation so error messages match the documented exception contract
- validate_thread_id: move from ensure_uploads_dir to get_uploads_dir so
all entry points (upload/list/delete) are protected
- delete_uploaded_file: catch ValueError from thread_id validation (was 500)
- requires_llm marker: also skip when OPENAI_API_KEY is unset
- e2e fixture: update TitleMiddleware exclusion comment (kept filtering —
middleware triggers extra LLM calls that add non-determinism to tests)
* chore: revert uv.lock to main — no dependency changes in this PR
* fix: use monkeypatch for global config in e2e fixture to prevent test pollution
The e2e_env fixture was calling set_title_config() and
set_summarization_config() directly, which mutated global singletons
without automatic cleanup. When pytest ran test_client_e2e.py before
test_title_middleware_core_logic.py, the leaked enabled=False caused
5 title tests to fail in CI.
Switched to monkeypatch.setattr on the module-level private variables
so pytest restores the originals after each test.
* fix: address code review — URL encoding, API consistency, test isolation
- upload_artifact_url: percent-encode filename to handle spaces/#/?
- deduplicate_filename: mutate seen set in place (caller no longer
needs manual .add() — less error-prone API)
- list_files_in_dir: document that size is int, enrich stringifies
- e2e fixture: monkeypatch _app_config instead of set_app_config()
to prevent global singleton pollution (same pattern as title/summarization fix)
- _make_e2e_config: read LLM connection details from env vars so
external contributors can override defaults
- Update tests to match new deduplicate_filename contract
* docs: rewrite RFC in English and add alternatives/breaking changes sections
* fix: address code review feedback on PR #1202
- Rename deduplicate_filename to claim_unique_filename to make
the in-place set mutation explicit in the function name
- Replace PermissionError with PathTraversalError(ValueError) for
path traversal detection — malformed input is 400, not 403
* fix: set _app_config_is_custom in e2e test fixture to prevent config.yaml lookup in CI
---------
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
* fix(threads): clean up local thread data after thread deletion
Delete DeerFlow-managed thread directories after the web UI removes a LangGraph thread.
This keeps local thread data in sync with conversation deletion and adds regression coverage for the cleanup flow.
* fix(threads): address thread cleanup review feedback
Encode thread cleanup URLs in the web client, keep cache updates explicit when no thread search data is cached, and return a generic 500 response from the cleanup endpoint while documenting the sanitized error behavior.
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Add GuardrailMiddleware that evaluates every tool call before execution.
Three provider options: built-in AllowlistProvider (zero deps), OAP passport
providers (open standard), or custom providers loaded by class path.
- GuardrailProvider protocol with GuardrailRequest/Decision dataclasses
- GuardrailMiddleware (AgentMiddleware, position 5 in chain)
- AllowlistProvider for simple deny/allow by tool name
- GuardrailsConfig (Pydantic singleton, loaded from config.yaml)
- 25 tests covering allow/deny, fail-closed/open, async, GraphBubbleUp
- Comprehensive docs at backend/docs/GUARDRAILS.md
Closes#1213
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
* feat: add Claude Code OAuth and Codex CLI providers
Port of bytedance/deer-flow#1136 from @solanian's feat/cli-oauth-providers branch.\n\nCarries the feature forward on top of current main without the original CLA-blocked commit metadata, while preserving attribution in the commit message for review.
* fix: harden CLI credential loading
Align Codex auth loading with the current ~/.codex/auth.json shape, make Docker credential mounts directory-based to avoid broken file binds on hosts without exported credential files, and add focused loader tests.
* refactor: tighten codex auth typing
Replace the temporary Any return type in CodexChatModel._load_codex_auth with the concrete CodexCliCredential type after the credential loader was stabilized.
* fix: load Claude Code OAuth from Keychain
Match Claude Code's macOS storage strategy more closely by checking the Keychain-backed credentials store before falling back to ~/.claude/.credentials.json. Keep explicit file overrides and add focused tests for the Keychain path.
* fix: require explicit Claude OAuth handoff
* style: format thread hooks reasoning request
* docs: document CLI-backed auth providers
* fix: address provider review feedback
* fix: harden provider edge cases
* Fix deferred tools, Codex message normalization, and local sandbox paths
* chore: narrow PR scope to OAuth providers
* chore: remove unrelated frontend changes
* chore: reapply OAuth branch frontend scope cleanup
* fix: preserve upload guards with reasoning effort wiring
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
* refactor: extract shared utils to break harness→app cross-layer imports
Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* refactor: split backend/src into harness (deerflow.*) and app (app.*)
Physically split the monolithic backend/src/ package into two layers:
- **Harness** (`packages/harness/deerflow/`): publishable agent framework
package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
models, MCP, skills, config, and all core infrastructure.
- **App** (`app/`): unpublished application code with import prefix `app.*`.
Contains gateway (FastAPI REST API) and channels (IM integrations).
Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure
Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* chore: add harness→app boundary check test and update docs
Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.
Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* feat: add config versioning with auto-upgrade on startup
When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.
- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix comments
* fix: update src.* import in test_sandbox_tools_security to deerflow.*
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: handle empty config and search parent dirs for config.example.yaml
Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
looking next to config.yaml, fixing detection in common setups
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: correct skills root path depth and config_version type coercion
- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
after harness split, file lives at packages/harness/deerflow/skills/
so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
_check_config_version() to prevent TypeError when YAML stores value
as string (e.g. config_version: "1")
- tests: add regression tests for both fixes
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix: update test imports from src.* to deerflow.*/app.* after harness refactor
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
* Add MiniMax as an OpenAI-compatible model provider
MiniMax offers high-performance LLMs (M2.5, M2.5-highspeed) with
204K context windows. This commit adds MiniMax as a selectable
provider in the configuration system.
Changes:
- Add MiniMax to SUPPORTED_MODELS with model definitions
- Add MiniMax provider configuration in conf/config.yaml
- Update documentation with MiniMax setup instructions
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* Update README to remove MiniMax API details
Removed mention of MiniMax API usage and configuration examples.
---------
Co-authored-by: octo-patch <octo-patch@users.noreply.github.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
* feat: add IM channels system for Feishu, Slack, and Telegram integration
Bridge external messaging platforms to DeerFlow via LangGraph Server with
async message bus, thread management, and per-channel configuration.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: address review comments on IM channels system
Fix topic_id handling in store remove/list_entries and manager commands,
correct Telegram reply threading, remove unused imports/variables, update
docstrings and docs to match implementation, and prevent config mutation.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* update skill creator
* fix im reply text
* fix comments
---------
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
add oauth schema to MCP server config (extensions_config.json)
support client_credentials and refresh_token grants
implement token manager with caching and pre-expiry refresh
inject OAuth Authorization header for MCP tool discovery and tool calls
extend MCP gateway config models to read/write OAuth settings
update docs and examples for OAuth configuration
add unit tests for token fetch/cache and header injection
* feat: add Novita AI as optional LLM provider
Adds Novita AI (https://novita.ai) as an optional, OpenAI-compatible
LLM provider.
Changes:
- Added Novita model configuration example in config.example.yaml
- Added NOVITA_API_KEY to .env.example
Usage: Set NOVITA_API_KEY in your environment and use novita-gpt-4
as the model name.
* update correct model info
* Update README.md
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Add accurate token counting using tiktoken library and significantly enhance
memory update prompts with detailed section guidelines, multilingual support,
and improved fact extraction. Update deep-research skill to be more proactive
for research queries.
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Add native Apple Container support for better performance on macOS while
maintaining full Docker compatibility. Enhance documentation with memory system
details, development guidelines, and sandbox setup instructions. Improve dev
experience with container image pre-pulling and unified cleanup tools.
Key changes:
- Auto-detect and prefer Apple Container on macOS with Docker fallback
- Add APPLE_CONTAINER.md with complete usage and troubleshooting guide
- Document memory system architecture in CLAUDE.md
- Add make setup-sandbox for pre-pulling container images
- Create cleanup-containers.sh for cross-runtime container cleanup
- Update all related documentation (README, SETUP, config examples)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Add README.md with project overview, quick start, and API reference
- Add CONTRIBUTING.md with development setup and contribution guidelines
- Add docs/ARCHITECTURE.md with detailed system architecture diagrams
- Add docs/API.md with complete API reference for LangGraph and Gateway
- Add docs/README.md as documentation index
- Update CLAUDE.md with improved structure and new features
- Update docs/TODO.md to reflect current status
- Update pyproject.toml description
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implement a skills framework that enables specialized workflows for
specific tasks (e.g., PDF processing, web page generation). Skills are
discovered from the skills/ directory and automatically mounted in
sandboxes with path mapping support.
- Add SkillsConfig for configuring skills path and container mount point
- Implement dynamic skill loading from SKILL.md files with YAML frontmatter
- Add path mapping in LocalSandbox to translate container paths to local paths
- Mount skills directory in AIO Docker sandbox containers
- Update lead agent prompt to dynamically inject available skills
- Add setup documentation and expand config.example.yaml
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
- Add AioSandboxProvider for Docker-based sandbox execution with
configurable container lifecycle, volume mounts, and port management
- Add TitleMiddleware to auto-generate thread titles after first
user-assistant exchange using LLM
- Add Claude Code documentation (CLAUDE.md, AGENTS.md)
- Extend SandboxConfig with Docker-specific options (image, port, mounts)
- Fix hardcoded mount path to use expanduser
- Add agent-sandbox and dotenv dependencies
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
