* refactor: extract shared utils to break harness→app cross-layer imports
Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* refactor: split backend/src into harness (deerflow.*) and app (app.*)
Physically split the monolithic backend/src/ package into two layers:
- **Harness** (`packages/harness/deerflow/`): publishable agent framework
package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
models, MCP, skills, config, and all core infrastructure.
- **App** (`app/`): unpublished application code with import prefix `app.*`.
Contains gateway (FastAPI REST API) and channels (IM integrations).
Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure
Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* chore: add harness→app boundary check test and update docs
Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.
Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* feat: add config versioning with auto-upgrade on startup
When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.
- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix comments
* fix: update src.* import in test_sandbox_tools_security to deerflow.*
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: handle empty config and search parent dirs for config.example.yaml
Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
looking next to config.yaml, fixing detection in common setups
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: correct skills root path depth and config_version type coercion
- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
after harness split, file lives at packages/harness/deerflow/skills/
so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
_check_config_version() to prevent TypeError when YAML stores value
as string (e.g. config_version: "1")
- tests: add regression tests for both fixes
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix: update test imports from src.* to deerflow.*/app.* after harness refactor
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
* fix(subagents): cleanup background tasks after completion to prevent memory leak
Added cleanup_background_task() function to remove completed subagent results
from the global _background_tasks dict. Found a small issue: completed tasks
were never removed, causing memory to grow indefinitely with each subagent
execution.
Alternative approaches considered:
- Future + SubagentHandle pattern: Not chosen due to requiring refactoring
Chose the simple cleanup approach for minimal code changes while effectively
resolving the memory leak.
Changes:
- Add cleanup_background_task() in executor.py
- Call cleanup in all task_tool return paths (completed, failed, timed out)
* fix(subagents): prevent race condition in background task cleanup
Address Copilot review feedback on memory leak fix:
- Add terminal state check in cleanup_background_task() to only remove
tasks that are COMPLETED/FAILED/TIMED_OUT or have completed_at set
- Remove cleanup call from polling safety-timeout branch in task_tool
since the task may still be running
- Add comprehensive tests for cleanup behavior including:
- Verification that cleanup is called on terminal states
- Verification that cleanup is NOT called on polling timeout
- Tests for terminal state check logic in executor
This prevents KeyError when the background executor tries to update
a task that was prematurely removed from _background_tasks.
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
* fix(subagent): support async MCP tools in subagent executor
SubagentExecutor.execute() was synchronous and could not handle async-only tools like MCP tools. This caused failures when trying to use MCP tools within subagents.
Changes:
- Add _aexecute() async method using agent.astream() for async execution
- Refactor execute() to use asyncio.run() wrapping _aexecute()
- This allows subagents to use async tools (MCP) within ThreadPoolExecutor
* test(subagent): add unit tests for executor async/sync paths
Add comprehensive tests covering:
- Async _aexecute() with success/error cases
- Sync execute() wrapper using asyncio.run()
- Async tool (MCP) support verification
- Thread pool execution safety
* fix(subagent): subagent-test-circular-depend
- Use session-scoped fixture with delayed import to handle circular dependencies
without affecting other test modules
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Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
